Report for Sequence Feature Glyma18g47020
Feature Type: gene_model
Chromosome: Gm18
Start: 56678001
stop: 56679026
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g47020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G61460 AT
Annotation by Michelle Graham. TAIR10: brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170
SoyBase E_val: 9.00E-62 ISS
GO:0009741 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0030003 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis
SoyBase N/A ISS
GO:0070838 GO-bp
Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR22764 Panther
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).
JGI ISS
PTHR22764:SF27 Panther
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_I1N3T0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3T0_SOYBN
SoyBase E_val: 4.00E-120 ISS
UniRef100_Q9XF92 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BRH1 RING finger protein n=2 Tax=Arabidopsis RepID=Q9XF92_ARATH
SoyBase E_val: 4.00E-59 ISS
Expression Patterns of Glyma18g47020
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g47020
Paralog Evidence Comments
Glyma09g39280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g47020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g235600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g47020
Coding sequences of Glyma18g47020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g47020.1 sequence type=CDS gene model=Glyma18g47020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTTTCCCGTAGGGTACCCGGAGCTGCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCCTCCTCGCGTGGCTGCGCTCCCTCGTCTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACCGATTCCGCCGCCTCTGACCTCCCTCCGCCGCCTCCGCCACGCGAGCCGACTCTCTCCGCCCTCCTCATCCGCGAGTTTCTCCCCGTGGCGGCGTTCCGCGACCTGGCAGCCGCCGACGGGGATCCTCCGCCGTCGGGCTGCGCCGTGTGCCTGAGCGAATTCTCCTCGGAAGAAGAAATCCGGTGTATGGCGAACTGCAAGCACATTTTCCACCGGTGGTGCGTGGACCGTTGGGTCGATCACGATCAGAAGACGTGTCCGCTCTGCAGAACTCCGTTTGTGCCGCATCACAAGCTCGAAGAATACAATCAGCGACTGTGGGCAGCTTCTGGAGTTTCACAGTTTTACTACCAAGACGATTACACGGCTTCTCTCTGA
Predicted protein sequences of Glyma18g47020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g47020.1 sequence type=predicted peptide gene model=Glyma18g47020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFPVGYPELLVPKMFLHALSLLAWLRSLVFALFRLLRISDLLDTDSAASDLPPPPPPREPTLSALLIREFLPVAAFRDLAAADGDPPPSGCAVCLSEFSSEEEIRCMANCKHIFHRWCVDRWVDHDQKTCPLCRTPFVPHHKLEEYNQRLWAASGVSQFYYQDDYTASL*
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